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Competitive inhibition

The double-reciprocal equation for competitive inhibition is as follows:

1/V0 = 1/Vmax + Km • α/Vmax • 1/[S]

where α = 1 + [I]/ KI the reciprocal of V 0 equals the reciprocal of V max plus K m times alpha divided by V max times the reciprocal of the substrate's concentration where alpha equals one plus the inhibitor's concentration divided by K I

Based on this equation, a double-reciprocal plot should give a straight line, with the intercept 1/ Vmax and slope Km • α / Vmax. the reciprocal of V max and slope K m times alpha divided by V max Different Lineweaver-Burk plots with varying inhibitor concentrations should, therefore, give different slopes (because α increases with the inhibitor concentration), but the same y-intercept.

This means, that Vmax at different concentrations of a competitive inhibitor is unchanged; however, the apparent Km, Km(app) (Km(app) = Km • α), differs. If double-reciprocal plots of 1/V0 against 1/[S] with varied inhibitor concentrations yield straight lines, with different slopes, but with the same y-intercept, the inhibitor is competitive (Figure 1) [1]. V max at different concentrations of a competitive inhibitor is unchanged; however, the apparent K m, which is equal to K m times alpha, differs. If double-reciprocal plots of the reciprocal of V 0 against the reciprocal of the substrate's concentration with varied inhibitor concentrations yield straight lines, with different slopes, but with the same y-intercept, the inhibitor is competitive.

On the left, a Lineweaver-Burk plot represents competitive inhibition, displaying three lines in green, blue, and red. These lines have distinct slopes, corresponding to varying inhibitor concentrations. Yet, they all intersect at the same point on the y-axis. The green line, with the highest inhibitor concentration, shows the steepest increase. The blue line has a lower inhibitor concentration than the green line but higher than the red line, which exhibits the slowest increase. On the right, another plot portrays the slopes of each linear regression against inhibitor concentration, demonstrating a direct relationship – as inhibitor concentration rises, so does the slope of the linear regression line.

Figure 1: Figure a; Lineweaver-Burk plot showing competitive inhibition. Figure b; Shows slopes of each linear regression plotted against the inhibitor concentration.

Calculating KI, Km, and Vmax calculating K I, K m, and V max

If the inhibitor is competitive, only 1 inhibitor constant needs to be calculated. To calculate the inhibitor constant, several assays with different inhibitor concentrations must be conducted. Each of the resulting datasets should be plotted and the slopes and y intercepts can be determined by linear regression. From these fits, Vmax can be calculated as the reciprocal of the y-intercept. If none of the kinetic parameters have been determined, this linear fit does not provide enough information to determine KI and Km. V max can be calculated as the reciprocal of the y-intercept. If none of the kinetic parameters have been determined, this linear fit does not provide enough information to determine K I and K m. To determine these parameters, it is necessary to plot the "slopes" from the different assays against the inhibitor concentration. Thus based on the following equation:

Slope competetive = Km • α/Vmax = Km/Vmax + Km/Vmax • 1/KI • [I] the slope of a competitive inhibition is equal to the k m times alpha divided by V max, which all equals to the K m divided by the V max plus K m divided by V max times the reciprocal of K I times the concentration of the inhibitor

This plot should therefore also result in a straight line with the intercept Km / Vmax, and slope (Km / Vmax ) • 1 / KI. Thus, KI can be calculated by dividing the y-intercept with the slope. Because Vmax has already been calculated, Km can be calculated from the y-intercept of this fit, by multiplying this intercept with Vmax. K m divided by V max, and slope K m divided by V max times one divided by K I. Thus, K I can be calculated by dividing the y-intercept with the slope. Because V max has already been calculated, K m can be calculated from the y-intercept of this fit, by multiplying this intercept with V max.

Steps of calculating the kinetic parameters when using a competitive inhibitor

Prepare Lineweaver-Burk plots of the kinetic data and fit the data using linear regression (1 fit per inhibitor concentration). The y-intercepts of the Lineweaver-Burk plots at different inhibitor concentrations should be the same (or at least close). Take the reciprocal to the y-intercept; this is Vmax. Plot the slopes of each of these lines as a function of the inhibitor concentration in a new plot, and fit this plot using linear regression. To calculate Km, multiply the y-intercept of this line with Vmax. To calculate KI, divide the y-intercept of this line with the slope. </muteV max. Plot the slopes of each of these lines as a function of the inhibitor concentration in a new plot, and fit this plot using linear regression. To calculate K m, multiply the y-intercept of this line with V max. To calculate K I, divide the y-intercept of this line with the slope.

References

  1. Lehninger, Albert L.; Nelson, David L.; Cox, Michael M. (2008). Principles of Biochemistry (5th ed.). New York, NY: W.H. Freeman and Company. ISBN 978-0-7167-7108-1.

Inhibitor

Theory overview

Referred from:

Article
Inhibitors